I disagree.
I think it's wonderful that people now have total freedom of choice to believe whatever they want. Some people that are vested in religion in earthly ways, such as the lovely Pope who lives a life of luxury while his largest base of followers are poorer than church mice mind the pun, would hate having his bread and butter questioned. However, someone who thinks that freedom of choice is the best thing God ever gave to man (eh? I made another joke see?) sees this newfound push to give everyone the ability to believe what they want WITHOUT being ostracized for it is wonderful. Normal religious people like myself, in my opinion, welcome this change.
You're free to believe what you want... (as long as you're not hoping to translate that into enforceable law, right? That applies to gays trying to get married, and people trying to impose Sharia, for instance). Hmm... guess you're not as free as you thought.
So, you're free, but you don't want that which you hold dear to be criticized in the slightest? Well, that's not nice.

Here's the rub of the problem: You don't wanna be questioned. You don't wanna be ostracized (apparently, to question and point out flaws is to ostracize someone. Oh, well). That's YOUR problem, though, not mine. I'm not dictating your choices, but your lack of openness to questioning and pointing out flaws is an attempt to dictate my choices. Guess what? I'm free (and not because some fairy tale says so, nor because a really intelligent man (Aquinas) busted his brains trying to figure out how to mold reality to the fairy tale, thus resulting in the myth of free will. Without a god, the story of free will is just that, a myth. OK, OK, it's a myth in the religious context... for are we really free to act and think? Or are we constrained by chains of causation we're unaware of?
) ... I'm free to do as I please. And, don't worry. My questioning is most likely only entrenching you further in your beliefs. I'm making you a ... "stronger" believer. You're welcome.